PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14778A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 67aa    MW: 7596.64 Da    PI: 11.2916
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14778AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151459146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                               +g W++eEde l + v+++G+ +W++I ++  ++R++k+c++rw +
  Oropetium_20150105_14778A 14 KGGWSAEEDEVLRQHVAEHGTQNWSSIQSKGLLNRSGKSCRLRWVN 59
                               688************************999889***********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-20766IPR009057Homeodomain-like
PROSITE profilePS5129420.598965IPR017930Myb domain
SuperFamilySSF466892.58E-161066IPR009057Homeodomain-like
SMARTSM007171.8E-111363IPR001005SANT/Myb domain
PfamPF002492.7E-141459IPR001005SANT/Myb domain
CDDcd001677.35E-111761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MAPRRRVERS EVKKGGWSAE EDEVLRQHVA EHGTQNWSSI QSKGLLNRSG KSCRLRWVNK  60
LQPGLK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052245.14e-23Myb-like HTH transcriptional regulator family protein, putative
SwissprotQ9LSI71e-16MYB35_ARATH; Transcription factor MYB35
TrEMBLA0A0Q3FIE02e-23A0A0Q3FIE0_BRADI; Uncharacterized protein
STRINGVIT_15s0021g02040.t016e-22(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-24MYB family protein